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Olamide Isreal 8e3b2170e9 Clean up pipeline configuration 
- Remove debug logging and dead PVC/direct-path fallbacks from main.nf
- Remove nf-amazon plugin and PVC storage config from nextflow.config
  (S3 access is handled by boto3 in the script)
- Simplify input download and output upload to single boto3 blocks
2026-03-23 18:27:50 +01:00
.gitignore
Add WES pipeline configuration for pocketminer
2026-03-23 13:27:40 +01:00
Dockerfile
Add boto3 to Docker image for authenticated S3/MinIO downloads
2026-03-23 16:53:21 +01:00
entrypoint.py
Add WES pipeline configuration for pocketminer
2026-03-23 13:27:40 +01:00
main.nf
Clean up pipeline configuration
2026-03-23 18:27:50 +01:00
Makefile
Add WES pipeline configuration for pocketminer
2026-03-23 13:27:40 +01:00
meta.yml
Add WES pipeline configuration for pocketminer
2026-03-23 13:27:40 +01:00
nextflow.config
Clean up pipeline configuration
2026-03-23 18:27:50 +01:00
params.json
Add WES pipeline configuration for pocketminer
2026-03-23 13:27:40 +01:00
README.md
Update file README.md
2025-12-17 00:49:56 +00:00

README.md

#Readme

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Description
PocketMiner - protein binding pocket prediction
Readme 59 KiB
Languages
Python 59.5%
Nextflow 22.1%
Makefile 11.5%
Dockerfile 6.9%