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Olamide Isreal 6aedad69e4 Add nf-amazon plugin for direct S3/MinIO access 
WES does not stage S3 input files to the Nextflow workdir.
Adding nf-amazon plugin so Channel.of(file(params.pdb)) can
resolve s3:// paths directly from MinIO without WES staging.
2026-03-23 14:51:34 +01:00
.gitignore
Add WES pipeline configuration for pocketminer
2026-03-23 13:27:40 +01:00
Dockerfile
Add WES pipeline configuration for pocketminer
2026-03-23 13:27:40 +01:00
entrypoint.py
Add WES pipeline configuration for pocketminer
2026-03-23 13:27:40 +01:00
main.nf
Remove stageInMode copy — may conflict with k8s executor
2026-03-23 14:04:50 +01:00
Makefile
Add WES pipeline configuration for pocketminer
2026-03-23 13:27:40 +01:00
meta.yml
Add WES pipeline configuration for pocketminer
2026-03-23 13:27:40 +01:00
nextflow.config
Add nf-amazon plugin for direct S3/MinIO access
2026-03-23 14:51:34 +01:00
params.json
Add WES pipeline configuration for pocketminer
2026-03-23 13:27:40 +01:00
README.md
Update file README.md
2025-12-17 00:49:56 +00:00

README.md

#Readme

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Description
PocketMiner - protein binding pocket prediction
Readme 59 KiB
Languages
Python 59.5%
Nextflow 22.1%
Makefile 11.5%
Dockerfile 6.9%