Olamide Isreal
6aedad69e4
WES does not stage S3 input files to the Nextflow workdir. Adding nf-amazon plugin so Channel.of(file(params.pdb)) can resolve s3:// paths directly from MinIO without WES staging.
49 lines
928 B
Plaintext
49 lines
928 B
Plaintext
// Manifest for Nextflow metadata
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manifest {
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name = 'pocketminer-Nextflow'
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author = 'Olamide'
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homePage = 'https://github.com/Mickdub/gvp'
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description = 'Nextflow pipeline for PocketMiner - cryptic binding pocket prediction using geometric deep learning'
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mainScript = 'main.nf'
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version = '1.0.0'
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}
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// S3/MinIO plugin for direct S3 access
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plugins {
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id 'nf-amazon'
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}
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aws {
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client {
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endpoint = 'http://datalake-hl.datalake.svc.cluster.local:9000'
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s3PathStyleAccess = true
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}
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}
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// Global default parameters
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params {
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pdb = null
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outdir = null
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debug = false
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}
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profiles {
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standard {
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docker {
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enabled = true
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runOptions = '--rm'
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}
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}
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k8s {
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process {
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container = 'harbor.cluster.omic.ai/omic/pocketminer:latest'
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}
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}
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}
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// Process configurations
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process {
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cpus = 2
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memory = '8 GB'
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}
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