pocketminer

omic/pocketminer

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Commit Graph

Author	SHA1	Message	Date
Olamide Isreal	5465d9b8b1	Fix nextflow.config to match WES k8s pattern - Match p2rank's working config structure: k8s profile only sets container - Let WES-generated profile.config handle executor, storage, and k8s settings - Add memory (8GB) and cpu (2) resource requests - Set params defaults to null (values provided by WES experiment_params) - Add manifest metadata	2026-03-23 13:51:38 +01:00
Olamide Isreal	42d4e6cb87	Add WES pipeline configuration for pocketminer - Add Nextflow pipeline (main.nf) with Harbor container image - Add nextflow.config with k8s/k8s_gpu/standard profiles - Add params.json for TRS/WES parameter discovery - Add Dockerfile, entrypoint.py, meta.yml from original implementation - Update paths to use /omic/eureka/Pocketminer/ convention - Update .gitignore to allow params.json	2026-03-23 13:27:40 +01:00

Author

SHA1

Message

Date

Olamide Isreal

5465d9b8b1

Fix nextflow.config to match WES k8s pattern

- Match p2rank's working config structure: k8s profile only sets container
- Let WES-generated profile.config handle executor, storage, and k8s settings
- Add memory (8GB) and cpu (2) resource requests
- Set params defaults to null (values provided by WES experiment_params)
- Add manifest metadata

2026-03-23 13:51:38 +01:00

Olamide Isreal

42d4e6cb87

Add WES pipeline configuration for pocketminer

- Add Nextflow pipeline (main.nf) with Harbor container image
- Add nextflow.config with k8s/k8s_gpu/standard profiles
- Add params.json for TRS/WES parameter discovery
- Add Dockerfile, entrypoint.py, meta.yml from original implementation
- Update paths to use /omic/eureka/Pocketminer/ convention
- Update .gitignore to allow params.json

2026-03-23 13:27:40 +01:00

2 Commits