Olamide Isreal
42d4e6cb87
- Add Nextflow pipeline (main.nf) with Harbor container image - Add nextflow.config with k8s/k8s_gpu/standard profiles - Add params.json for TRS/WES parameter discovery - Add Dockerfile, entrypoint.py, meta.yml from original implementation - Update paths to use /omic/eureka/Pocketminer/ convention - Update .gitignore to allow params.json
37 lines
731 B
Plaintext
37 lines
731 B
Plaintext
profiles {
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standard {
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docker {
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enabled = true
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temp = 'auto'
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}
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}
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k8s {
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process {
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executor = 'k8s'
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}
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docker {
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enabled = true
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}
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k8s {
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storageClaimName = 'eureka-pvc'
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storageMountPath = '/omic/eureka'
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}
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}
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k8s_gpu {
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process {
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executor = 'k8s'
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pod = [[nodeSelector: 'nvidia.com/gpu.present=true']]
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accelerator = [request: 1, type: 'nvidia.com/gpu']
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}
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docker {
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enabled = true
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}
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k8s {
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storageClaimName = 'eureka-pvc'
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storageMountPath = '/omic/eureka'
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}
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}
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}
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