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• 8e3b2170e9 Clean up pipeline configuration master Olamide Isreal 2026-03-23 18:27:50 +01:00
• a430caaf96 Upload results to S3 via boto3 instead of publishDir (fixes S3 write) Olamide Isreal 2026-03-23 18:07:53 +01:00
• e52adef212 Use v2 image tag to force fresh pull with boto3 baked in Olamide Isreal 2026-03-23 17:56:16 +01:00
• c0f82a2055 Add boto3 to Docker image for authenticated S3/MinIO downloads Olamide Isreal 2026-03-23 16:53:21 +01:00
• 9d132c308d Install boto3 at runtime for authenticated S3 download (fix syntax error) Olamide Isreal 2026-03-23 16:14:05 +01:00
• c0f0e38f27 Use boto3/signed URL for authenticated MinIO download (403 fix) Olamide Isreal 2026-03-23 16:06:50 +01:00
• 7abd6eb267 Use wget/python instead of curl for MinIO download (curl not in image) Olamide Isreal 2026-03-23 15:56:09 +01:00
• e74a9441a4 Fix input resolution: disable bash strict mode, quiet logging, add auth fallback Olamide Isreal 2026-03-23 15:50:52 +01:00
• 35dd4ab976 Add multi-method input file resolution for WES Olamide Isreal 2026-03-23 15:41:13 +01:00
• 14091fce87 Match meta-predictor's working WES pattern Olamide Isreal 2026-03-23 15:27:23 +01:00
• 6aedad69e4 Add nf-amazon plugin for direct S3/MinIO access Olamide Isreal 2026-03-23 14:51:34 +01:00
• 4660bdf62a Remove stageInMode copy — may conflict with k8s executor Olamide Isreal 2026-03-23 14:04:50 +01:00
• 5465d9b8b1 Fix nextflow.config to match WES k8s pattern Olamide Isreal 2026-03-23 13:51:38 +01:00
• 42d4e6cb87 Add WES pipeline configuration for pocketminer Olamide Isreal 2026-03-23 13:27:40 +01:00
• 6071e5ad1f Update file README.md Gabe Richman 2025-12-17 00:49:56 +00:00