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Use v2 image tag to force fresh pull with boto3 baked in

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Olamide Isreal
2026-03-23 17:56:16 +01:00
parent c0f82a2055
commit e52adef212
2 changed files with 2 additions and 5 deletions
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5
main.nf
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@@ -9,7 +9,7 @@ params.model_path = '/workspace/gvp/models/pocketminer'
params.debug = false params.debug = false
process POCKETMINER { process POCKETMINER {
container 'harbor.cluster.omic.ai/omic/pocketminer:latest' container 'harbor.cluster.omic.ai/omic/pocketminer:v2'
publishDir params.outdir, mode: 'copy' publishDir params.outdir, mode: 'copy'
input: input:
@@ -66,9 +66,6 @@ process POCKETMINER {
echo "AWS_SECRET_ACCESS_KEY: \${AWS_SECRET_ACCESS_KEY:+set}" >> run.log echo "AWS_SECRET_ACCESS_KEY: \${AWS_SECRET_ACCESS_KEY:+set}" >> run.log
echo "AWS_ENDPOINT_URL: \${AWS_ENDPOINT_URL:-not set}" >> run.log echo "AWS_ENDPOINT_URL: \${AWS_ENDPOINT_URL:-not set}" >> run.log
# Install boto3 if needed, then download
pip install -q boto3 2>> run.log || conda install -y -q boto3 2>> run.log || true
python -c " python -c "
import os, sys import os, sys
s3_path = os.environ.get('S3_INPUT', '${pdb_path}') s3_path = os.environ.get('S3_INPUT', '${pdb_path}')

2
nextflow.config
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@@ -39,7 +39,7 @@ profiles {
k8s { k8s {
process { process {
executor = 'k8s' executor = 'k8s'
container = 'harbor.cluster.omic.ai/omic/pocketminer:latest' container = 'harbor.cluster.omic.ai/omic/pocketminer:v2'
} }
docker { docker {
enabled = true enabled = true