From e52adef2129040c581257841dd9ef66f8fb56782 Mon Sep 17 00:00:00 2001
From: Olamide Isreal <olamide@omicmd.com>
Date: Mon, 23 Mar 2026 17:56:16 +0100
Subject: [PATCH] Use v2 image tag to force fresh pull with boto3 baked in

---
 main.nf         | 5 +----
 nextflow.config | 2 +-
 2 files changed, 2 insertions(+), 5 deletions(-)

diff --git a/main.nf b/main.nf
index c33b676..022029c 100644
--- a/main.nf
+++ b/main.nf
@@ -9,7 +9,7 @@ params.model_path = '/workspace/gvp/models/pocketminer'
 params.debug = false
 
 process POCKETMINER {
-    container 'harbor.cluster.omic.ai/omic/pocketminer:latest'
+    container 'harbor.cluster.omic.ai/omic/pocketminer:v2'
     publishDir params.outdir, mode: 'copy'
 
     input:
@@ -66,9 +66,6 @@ process POCKETMINER {
             echo "AWS_SECRET_ACCESS_KEY: \${AWS_SECRET_ACCESS_KEY:+set}" >> run.log
             echo "AWS_ENDPOINT_URL: \${AWS_ENDPOINT_URL:-not set}" >> run.log
 
-            # Install boto3 if needed, then download
-            pip install -q boto3 2>> run.log || conda install -y -q boto3 2>> run.log || true
-
             python -c "
 import os, sys
 s3_path = os.environ.get('S3_INPUT', '${pdb_path}')
diff --git a/nextflow.config b/nextflow.config
index 90a4924..c8279b0 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -39,7 +39,7 @@ profiles {
     k8s {
         process {
             executor = 'k8s'
-            container = 'harbor.cluster.omic.ai/omic/pocketminer:latest'
+            container = 'harbor.cluster.omic.ai/omic/pocketminer:v2'
         }
         docker {
             enabled = true