diff --git a/main.nf b/main.nf index c33b676..022029c 100644 --- a/main.nf +++ b/main.nf @@ -9,7 +9,7 @@ params.model_path = '/workspace/gvp/models/pocketminer' params.debug = false process POCKETMINER { - container 'harbor.cluster.omic.ai/omic/pocketminer:latest' + container 'harbor.cluster.omic.ai/omic/pocketminer:v2' publishDir params.outdir, mode: 'copy' input: @@ -66,9 +66,6 @@ process POCKETMINER { echo "AWS_SECRET_ACCESS_KEY: \${AWS_SECRET_ACCESS_KEY:+set}" >> run.log echo "AWS_ENDPOINT_URL: \${AWS_ENDPOINT_URL:-not set}" >> run.log - # Install boto3 if needed, then download - pip install -q boto3 2>> run.log || conda install -y -q boto3 2>> run.log || true - python -c " import os, sys s3_path = os.environ.get('S3_INPUT', '${pdb_path}') diff --git a/nextflow.config b/nextflow.config index 90a4924..c8279b0 100644 --- a/nextflow.config +++ b/nextflow.config @@ -39,7 +39,7 @@ profiles { k8s { process { executor = 'k8s' - container = 'harbor.cluster.omic.ai/omic/pocketminer:latest' + container = 'harbor.cluster.omic.ai/omic/pocketminer:v2' } docker { enabled = true