23 lines
905 B
Plaintext
23 lines
905 B
Plaintext
nextflow.enable.dsl=2
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process DEBUG {
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container 'harbor.cluster.omic.ai/omic/digital-patients/synthea:cudf'
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script:
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"""
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echo "PWD: \$(pwd)"
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echo "=== /omic/eureka/ ==="
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ls /omic/eureka/ 2>&1 | head -20
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echo "=== /omic/eureka/digital-patients/ ==="
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ls -la /omic/eureka/digital-patients/ 2>&1 | head -30
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echo "=== /omic/eureka/digital-patients/imputed/ ==="
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ls -la /omic/eureka/digital-patients/imputed/ 2>&1 | head -20
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echo "=== /omic/eureka/digital-patients/healthy/ ==="
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ls -la /omic/eureka/digital-patients/healthy/ 2>&1 | head -20
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echo "=== /omic/eureka/digital-patients/supporting-data/ ==="
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ls -laR /omic/eureka/digital-patients/supporting-data/ 2>&1 | head -30
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echo "=== Test write ==="
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echo "test" > /omic/eureka/digital-patients/write_test.txt && echo "WRITE OK" || echo "WRITE FAILED"
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echo "DONE"
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"""
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}
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workflow { DEBUG() }
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