chai-lab/nextflow.config

aws {
    client {
        endpoint = 'https://s3.cluster.omic.ai'
        s3PathStyleAccess = true
    }
}

profiles {
    standard {
        docker {
            enabled = true
            temp = 'auto'
        }
    }

    k8s {
        process {
            executor = 'k8s'
        }
        docker {
            enabled = true
        }
        k8s {
            storageClaimName = 'eureka-pvc'
            storageMountPath = '/omic/eureka'
            namespace = 'nextflow'
            serviceAccount = 'nextflow'
        }
    }

    k8s_gpu {
        process {
            executor = 'k8s'
            pod = [[nodeSelector: 'nvidia.com/gpu.present=true']]
            accelerator = [request: 1, type: 'nvidia.com/gpu']
        }
        docker {
            enabled = true
        }
        k8s {
            storageClaimName = 'eureka-pvc'
            storageMountPath = '/omic/eureka'
            namespace = 'nextflow'
            serviceAccount = 'nextflow'
        }
    }
}