omic
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  • Joined on 2025-10-06
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omic pushed to main at omic/ligandmpnn 2026-03-19 10:27:29 +00:00
2534e0f457 Use v2 image tag to force fresh pull on k8s
omic pushed to main at omic/ligandmpnn 2026-03-19 10:13:05 +00:00
677566e46d Fix container entrypoint for WES k8s execution
omic pushed to main at omic/ligandmpnn 2026-03-18 21:47:50 +00:00
4d199b4207 Configure pipeline for WES execution with Harbor image and s3 paths
omic pushed to main at omic/ligandmpnn 2026-03-18 21:31:39 +00:00
e7261ba7ce Add LigandMPNN Nextflow pipeline for protein sequence design
omic created branch main in omic/ligandmpnn 2026-03-18 21:31:38 +00:00
omic created repository omic/ligandmpnn 2026-03-18 21:29:08 +00:00
omic pushed to master at omic/prodigy 2026-03-17 15:44:30 +00:00
c8fd6b4084 Fix input path to s3://omic/eureka/prodigy/*.pdb
omic pushed to master at omic/prodigy 2026-03-17 15:38:22 +00:00
19fd443501 Configure PRODIGY pipeline for WES execution with S3 and Harbor
omic created branch master in omic/prodigy 2026-03-17 15:38:22 +00:00
omic created repository omic/prodigy 2026-03-17 15:21:14 +00:00
omic pushed to master at omic/chai-lab 2026-03-16 19:29:29 +00:00
9ffba5cb2c Production config: disable MSA, 1 sample, errorStrategy ignore
omic pushed to main at omic/flowdock 2026-03-16 19:24:16 +00:00
73093ce5e7 Clean up main.nf: remove debug copy block and file listing
omic pushed to master at omic/chai-lab 2026-03-16 18:55:05 +00:00
fdbd7bf863 Use dedicated input subdirectory to avoid stale files
omic pushed to master at omic/chai-lab 2026-03-16 17:21:50 +00:00
64a323a486 Use v3 image with transformers 4.44.2 (EsmModel compatible)
a191b6e192 Pin transformers<4.45 to fix EsmModel import at runtime
Compare 2 commits »
omic pushed to master at omic/chai-lab 2026-03-16 16:40:43 +00:00
8ca37f1922 Use v2 image tag to force K8s to pull updated image
omic pushed to main at omic/flowdock 2026-03-16 15:23:58 +00:00
d053dd744f Switch trainer from gpu to cpu for WES compatibility
omic pushed to master at omic/chai-lab 2026-03-16 15:06:41 +00:00
66e7a03081 Fix permission errors: make chai_lab dirs writable for K8s
omic pushed to master at omic/chai-lab 2026-03-16 14:42:37 +00:00
7c8629330b Add global docker/process config and fix k8s_gpu profile
omic pushed to main at omic/immunebuilder 2026-03-16 14:42:13 +00:00
40d5424593 Remove deprecated nextflow.enable.dsl=2 for Nextflow >=24.x compatibility
omic pushed to master at omic/chai-lab 2026-03-16 14:34:59 +00:00
8bb6720fc1 Add k8s and k8s_gpu profiles for WES execution