omic
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  • Joined on 2025-10-06
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omic pushed to master at omic/synthea-alldiseases 2026-03-25 13:51:13 +00:00
f8df39d9af Fix script to write outputs to Nextflow work dir
omic pushed to master at omic/synthea-alldiseases 2026-03-25 13:30:04 +00:00
02d93f9360 Fix image pull and gender arg for WES
omic pushed to master at omic/synthea-alldiseases 2026-03-25 12:30:27 +00:00
f29323323b Use pre-built jar and v2 tag to bypass Gradle permission issue
omic pushed to master at omic/synthea-alldiseases 2026-03-25 11:57:50 +00:00
a871107728 Fix Dockerfile permissions for K8s execution
omic pushed to master at omic/synthea-alldiseases 2026-03-25 11:31:53 +00:00
d468509ec3 Configure synthea-alldiseases for WES execution
e10ae0cf81 Fixed patient generation with separate script approach
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omic pushed to dev at omic/synthea-alldiseases 2026-03-25 11:31:42 +00:00
d468509ec3 Configure synthea-alldiseases for WES execution
omic pushed to dev at omic/synthea-alldiseases 2026-03-25 09:47:06 +00:00
e10ae0cf81 Fixed patient generation with separate script approach
omic created branch dev in omic/synthea-alldiseases 2026-03-25 09:47:06 +00:00
omic pushed to master at omic/synthea-alldiseases 2026-03-25 09:47:05 +00:00
omic created branch master in omic/synthea-alldiseases 2026-03-25 09:47:05 +00:00
omic created repository omic/synthea-alldiseases 2026-03-25 09:46:30 +00:00
omic pushed to main at omic/propka 2026-03-24 20:08:58 +00:00
bf7728d976 Add k8s executor and storage config to nextflow.config
omic pushed to main at omic/propka 2026-03-24 20:03:17 +00:00
8dd0ef8d6a Configure propka pipeline for WES/k8s execution
omic pushed to main at omic/rosettafold-all-atom 2026-03-24 18:05:19 +00:00
b099a5ee38 Update nextflow config for Wes K8s execution with proper profiles
6eef3bb748 Initial commit: RoseTTAFold-All-Atom configured for Wes with Harbor images and s3:// paths
omic created branch main in omic/rosettafold-all-atom 2026-03-24 18:05:19 +00:00
omic created repository omic/rosettafold-all-atom 2026-03-24 18:04:57 +00:00
omic pushed to main at omic/propka 2026-03-24 15:00:21 +00:00
1c6d9582d0 Add Nextflow pipeline for PROPKA with Docker configuration
27e0ad2f8d Merge pull request #187 from speleo3/remove-unused
25ed65eed9 More static typing
c8d93f6f01 Remove unused arguments, replace mutable defaults
9ea6d8815d Remove some unused code
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omic created branch main in omic/propka 2026-03-24 15:00:21 +00:00
omic created repository omic/propka 2026-03-24 14:54:19 +00:00
omic pushed to master at omic/pocketminer 2026-03-23 17:27:55 +00:00
8e3b2170e9 Clean up pipeline configuration