omic
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  • Joined on 2025-10-06
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omic pushed to master at omic/bioemu 2026-03-26 15:03:48 +00:00
1febdbe11f Force image pull in k8s profiles to pick up latest image
omic pushed to master at omic/bioemu 2026-03-26 14:33:32 +00:00
f9223922db Fix getpwuid error: add UID 1000 user for k8s compatibility
omic pushed to main at omic/digital-patients 2026-03-26 14:16:38 +00:00
9e6a16c19b Initial commit: digital-patients pipeline (clean, no large files)
omic created branch main in omic/digital-patients 2026-03-26 14:16:38 +00:00
omic created repository omic/digital-patients 2026-03-26 13:56:23 +00:00
omic pushed to master at omic/bioemu 2026-03-26 13:55:42 +00:00
e172ccc453 Simplify workflow: separate processes per protein, avoid filter/map chains
omic pushed to master at omic/bioemu 2026-03-26 13:30:10 +00:00
ce1f5dff03 Fix StackOverflowError: use Channel.fromPath instead of Channel.fromList with file()
omic pushed to master at omic/bioemu 2026-03-26 13:20:39 +00:00
04a580a3c0 Simplify nextflow.config for WES compatibility
omic pushed to master at omic/bioemu 2026-03-26 13:12:11 +00:00
f776745722 Configure bioemu for WES deployment
omic pushed to master at omic/bioemu 2026-03-26 09:50:52 +00:00
ca4ceae21e Add WES Dockerfile and fix binding script copy path
83525663c9 Implement interface-adaptive binding energy calculator
2cfbf64e92 Add BioEmu Nextflow pipeline implementation
omic created branch master in omic/bioemu 2026-03-26 09:50:52 +00:00
omic created repository omic/bioemu 2026-03-26 09:50:06 +00:00
omic pushed to master at omic/corto 2026-03-25 14:13:24 +00:00
b773e291d2 Merge branch 'single'
4bbc9822af Configure corto for WES k8s execution
aaa43a4d54 Update CORTO pipeline with params.json and workflow improvements
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omic pushed to single at omic/corto 2026-03-25 14:12:51 +00:00
4bbc9822af Configure corto for WES k8s execution
omic pushed to master at omic/synthea-alldiseases 2026-03-25 14:09:11 +00:00
67bd6692b0 Clean up pipeline files
omic pushed to single at omic/corto 2026-03-25 14:01:03 +00:00
aaa43a4d54 Update CORTO pipeline with params.json and workflow improvements
omic created branch single in omic/corto 2026-03-25 14:01:03 +00:00
omic pushed to master at omic/corto 2026-03-25 14:01:03 +00:00
b408cfd4dd updated readme with specific details around which R script code was implemented.
21d77e3faa Added custom data prep and matrix combination steps meant to perform similar but improved functions to the R code. Added readme detailing the code.
Compare 2 commits »
omic created branch master in omic/corto 2026-03-25 14:01:02 +00:00
omic created repository omic/corto 2026-03-25 14:00:38 +00:00