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synthea-alldiseases/.nextflow.log

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Mar-23 11:46:18.059 [main] DEBUG nextflow.cli.Launcher - $> nextflow run main.nf --disease_name 'Multiple Sclerosis' --population 10
Mar-23 11:46:18.328 [main] DEBUG nextflow.cli.CmdRun - N E X T F L O W ~ version 24.10.5
Mar-23 11:46:18.401 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/Users/richman/.nextflow/plugins; core-plugins: nf-amazon@2.9.2,nf-azure@1.10.2,nf-cloudcache@0.4.2,nf-codecommit@0.2.2,nf-console@1.1.4,nf-google@1.15.4,nf-tower@1.9.3,nf-wave@1.7.4
Mar-23 11:46:18.445 [main] INFO o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
Mar-23 11:46:18.446 [main] INFO o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
Mar-23 11:46:18.455 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode
Mar-23 11:46:18.502 [main] INFO org.pf4j.AbstractPluginManager - No plugins
Mar-23 11:46:18.606 [main] DEBUG nextflow.config.ConfigBuilder - Found config local: /Users/richman/workspace/synthea-alldiseases/nextflow.config
Mar-23 11:46:18.618 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /Users/richman/workspace/synthea-alldiseases/nextflow.config
Mar-23 11:46:18.773 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /Users/richman/.nextflow/secrets/store.json
Mar-23 11:46:18.784 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@22df874e] - activable => nextflow.secret.LocalSecretsProvider@22df874e
Mar-23 11:46:18.865 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard`
Mar-23 11:46:20.661 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 from script declaration
Mar-23 11:46:20.698 [main] DEBUG nextflow.cli.CmdRun - Launching `main.nf` [astonishing_jennings] DSL2 - revision: eefd540325
Mar-23 11:46:20.702 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[]
Mar-23 11:46:20.702 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[]
Mar-23 11:46:20.820 [main] DEBUG nextflow.Session - Session UUID: 02e2b57f-ce09-4ca9-9884-4a04f4cc41f5
Mar-23 11:46:20.823 [main] DEBUG nextflow.Session - Run name: astonishing_jennings
Mar-23 11:46:20.826 [main] DEBUG nextflow.Session - Executor pool size: 10
Mar-23 11:46:20.840 [main] DEBUG nextflow.file.FilePorter - File porter settings maxRetries=3; maxTransfers=50; pollTimeout=null
Mar-23 11:46:20.852 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=30; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
Mar-23 11:46:20.910 [main] DEBUG nextflow.cli.CmdRun -
Version: 24.10.5 build 5935
Created: 04-03-2025 17:55 UTC (09:55 PDT)
System: Mac OS X 10.16
Runtime: Groovy 4.0.23 on OpenJDK 64-Bit Server VM 15.0.2+7-27
Encoding: UTF-8 (UTF-8)
Process: 74324@MacBookPro.localdomain [192.168.1.157]
CPUs: 10 - Mem: 32 GB (19.2 MB) - Swap: 6 GB (1.6 GB)
Mar-23 11:46:20.942 [main] DEBUG nextflow.Session - Work-dir: /Users/richman/workspace/synthea-alldiseases/work [Mac OS X]
Mar-23 11:46:20.943 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /Users/richman/workspace/synthea-alldiseases/bin
Mar-23 11:46:20.958 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[]
Mar-23 11:46:20.973 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory
Mar-23 11:46:21.062 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory
Mar-23 11:46:21.105 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 11; maxThreads: 1000
Mar-23 11:46:21.179 [main] DEBUG nextflow.Session - Session start
Mar-23 11:46:21.188 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow started -- trace file: /Users/richman/workspace/synthea-alldiseases/trace.txt
Mar-23 11:46:22.257 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
Mar-23 11:46:22.496 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: local
Mar-23 11:46:22.496 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Mar-23 11:46:22.512 [main] DEBUG nextflow.executor.Executor - [warm up] executor > local
Mar-23 11:46:22.519 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=10; memory=32 GB; capacity=10; pollInterval=100ms; dumpInterval=5m
Mar-23 11:46:22.522 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local)
Mar-23 11:46:22.691 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: local
Mar-23 11:46:22.691 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Mar-23 11:46:22.699 [main] DEBUG nextflow.Session - Workflow process names [dsl2]: checkAndGetModule, generatePatients
Mar-23 11:46:22.701 [main] DEBUG nextflow.Session - Igniting dataflow network (2)
Mar-23 11:46:22.701 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > checkAndGetModule
Mar-23 11:46:22.702 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > generatePatients
Mar-23 11:46:22.703 [main] DEBUG nextflow.script.ScriptRunner - Parsed script files:
Script_90804d0522a60a16: /Users/richman/workspace/synthea-alldiseases/main.nf
Mar-23 11:46:22.704 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination
Mar-23 11:46:22.704 [main] DEBUG nextflow.Session - Session await
Mar-23 11:46:23.175 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Mar-23 11:46:23.181 [Task submitter] INFO nextflow.Session - [48/6b3902] Submitted process > checkAndGetModule
Mar-23 11:46:24.277 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: checkAndGetModule; status: COMPLETED; exit: 1; error: -; workDir: /Users/richman/workspace/synthea-alldiseases/work/48/6b39028ef9836c1989643d36911af1]
Mar-23 11:46:24.279 [Task monitor] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'TaskFinalizer' minSize=10; maxSize=30; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
Mar-23 11:46:24.301 [TaskFinalizer-1] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
task: name=checkAndGetModule; work-dir=/Users/richman/workspace/synthea-alldiseases/work/48/6b39028ef9836c1989643d36911af1
error [nextflow.exception.ProcessFailedException]: Process `checkAndGetModule` terminated with an error exit status (1)
Mar-23 11:46:24.343 [TaskFinalizer-1] ERROR nextflow.processor.TaskProcessor - Error executing process > 'checkAndGetModule'
Caused by:
Process `checkAndGetModule` terminated with an error exit status (1)
Command executed:
echo "Looking for module at /app/src/main/resources/modules/multiple_sclerosis.json"
if [ -f "/app/src/main/resources/modules/multiple_sclerosis.json" ]; then
echo "Module exists, copying..."
cp "/app/src/main/resources/modules/multiple_sclerosis.json" .
else
echo "Module not found, generating..."
python3 /app/module_generator/module_generator.py --disease "Multiple Sclerosis" --output "multiple_sclerosis.json"
if [ -f "multiple_sclerosis.json" ]; then
echo "Successfully generated module"
else
echo "Error: Failed to generate module"
exit 1
fi
fi
Command exit status:
1
Command output:
Looking for module at /app/src/main/resources/modules/multiple_sclerosis.json
Module not found, generating...
Command error:
Looking for module at /app/src/main/resources/modules/multiple_sclerosis.json
Module not found, generating...
Traceback (most recent call last):
File "/app/module_generator/module_generator.py", line 90, in <module>
client = anthropic.Client(api_key=api_key)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/venv/lib/python3.12/site-packages/anthropic/_client.py", line 113, in __init__
super().__init__(
File "/opt/venv/lib/python3.12/site-packages/anthropic/_base_client.py", line 758, in __init__
self._client = http_client or SyncHttpxClientWrapper(
^^^^^^^^^^^^^^^^^^^^^^^
TypeError: Client.__init__() got an unexpected keyword argument 'proxies'
Work dir:
/Users/richman/workspace/synthea-alldiseases/work/48/6b39028ef9836c1989643d36911af1
Container:
synthea-module-generator
Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
Mar-23 11:46:24.361 [main] DEBUG nextflow.Session - Session await > all processes finished
Mar-23 11:46:24.361 [TaskFinalizer-1] DEBUG nextflow.Session - Session aborted -- Cause: Process `checkAndGetModule` terminated with an error exit status (1)
Mar-23 11:46:24.396 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local) - terminating tasks monitor poll loop
Mar-23 11:46:24.397 [main] DEBUG nextflow.Session - Session await > all barriers passed
Mar-23 11:46:24.431 [main] DEBUG n.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=0; failedCount=1; ignoredCount=0; cachedCount=0; pendingCount=0; submittedCount=0; runningCount=0; retriesCount=0; abortedCount=0; succeedDuration=0ms; failedDuration=995ms; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=1; peakCpus=1; peakMemory=0; ]
Mar-23 11:46:24.437 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow completed -- saving trace file
Mar-23 11:46:24.466 [TaskFinalizer-1] DEBUG nextflow.Session -
Thread[Actor Thread 5,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[Reference Handler,10,system]
java.base@15.0.2/java.lang.ref.Reference.waitForReferencePendingList(Native Method)
java.base@15.0.2/java.lang.ref.Reference.processPendingReferences(Reference.java:241)
java.base@15.0.2/java.lang.ref.Reference$ReferenceHandler.run(Reference.java:213)
Thread[Actor Thread 4,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[Finalizer,8,system]
java.base@15.0.2/java.lang.Object.wait(Native Method)
java.base@15.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
java.base@15.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:176)
java.base@15.0.2/java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:170)
Thread[Actor Thread 2,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[Common-Cleaner,8,InnocuousThreadGroup]
java.base@15.0.2/java.lang.Object.wait(Native Method)
java.base@15.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
java.base@15.0.2/jdk.internal.ref.CleanerImpl.run(CleanerImpl.java:148)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
java.base@15.0.2/jdk.internal.misc.InnocuousThread.run(InnocuousThread.java:134)
Thread[Actor Thread 8,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[Actor Thread 11,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[process reaper,10,system]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:252)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:462)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
java.base@15.0.2/java.util.concurrent.SynchronousQueue.poll(SynchronousQueue.java:937)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1055)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[Actor Thread 3,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[Actor Thread 6,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[Actor Thread 1,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[Signal Dispatcher,9,system]
Thread[Thread-1,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:252)
java.base@15.0.2/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:1661)
java.base@15.0.2/java.util.concurrent.LinkedBlockingDeque.pollFirst(LinkedBlockingDeque.java:515)
java.base@15.0.2/java.util.concurrent.LinkedBlockingDeque.poll(LinkedBlockingDeque.java:677)
app//nextflow.util.SimpleAgent.run(SimpleAgent.groovy:89)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017)
app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
app//groovy.lang.Closure.call(Closure.java:433)
app//groovy.lang.Closure.call(Closure.java:412)
app//groovy.lang.Closure.run(Closure.java:505)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[Actor Thread 7,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[TaskFinalizer-1,5,main]
java.base@15.0.2/java.lang.Thread.dumpThreads(Native Method)
java.base@15.0.2/java.lang.Thread.getAllStackTraces(Thread.java:1649)
app//nextflow.util.SysHelper.dumpThreads(SysHelper.groovy:188)
app//nextflow.Session.abort(Session.groovy:800)
app//nextflow.Session.fault(Session.groovy:766)
app//nextflow.processor.TaskPollingMonitor.finalizeTask(TaskPollingMonitor.groovy:695)
app//nextflow.processor.TaskPollingMonitor.safeFinalizeTask(TaskPollingMonitor.groovy:678)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
app//org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645)
app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628)
app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82)
app//nextflow.processor.TaskPollingMonitor$_checkTaskStatus_lambda8.doCall(TaskPollingMonitor.groovy:668)
app//nextflow.processor.TaskPollingMonitor$$Lambda$437/0x0000000800f54530.run(Unknown Source)
java.base@15.0.2/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
java.base@15.0.2/java.util.concurrent.FutureTask.run(FutureTask.java:264)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1130)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[pool-2-thread-1,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341)
java.base@15.0.2/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:505)
java.base@15.0.2/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3137)
java.base@15.0.2/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1614)
java.base@15.0.2/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[AnsiLogObserver,5,main]
java.base@15.0.2/java.lang.Object.wait(Native Method)
app//nextflow.trace.AnsiLogObserver.render0(AnsiLogObserver.groovy:185)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017)
app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
app//groovy.lang.Closure.call(Closure.java:433)
app//groovy.lang.Closure.call(Closure.java:412)
app//groovy.lang.Closure.run(Closure.java:505)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[Task submitter,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341)
java.base@15.0.2/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:505)
java.base@15.0.2/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3137)
java.base@15.0.2/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1614)
app//nextflow.processor.TaskPollingMonitor.awaitTasks(TaskPollingMonitor.groovy:388)
app//nextflow.processor.TaskPollingMonitor.submitLoop(TaskPollingMonitor.groovy:412)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017)
app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
app//groovy.lang.Closure.call(Closure.java:433)
app//groovy.lang.Closure.call(Closure.java:412)
app//groovy.lang.Closure.run(Closure.java:505)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[Actor Thread 10,5,main]
java.base@15.0.2/java.util.zip.Inflater.inflateBytesBytes(Native Method)
java.base@15.0.2/java.util.zip.Inflater.inflate(Inflater.java:378)
java.base@15.0.2/java.util.zip.InflaterInputStream.read(InflaterInputStream.java:152)
java.base@15.0.2/jdk.internal.loader.Resource.getBytes(Resource.java:126)
java.base@15.0.2/jdk.internal.loader.BuiltinClassLoader.defineClass(BuiltinClassLoader.java:822)
java.base@15.0.2/jdk.internal.loader.BuiltinClassLoader.findClassOnClassPathOrNull(BuiltinClassLoader.java:723)
java.base@15.0.2/jdk.internal.loader.BuiltinClassLoader.loadClassOrNull(BuiltinClassLoader.java:646)
java.base@15.0.2/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:604)
java.base@15.0.2/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:168)
java.base@15.0.2/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
app//de.javakaffee.kryoserializers.UnmodifiableCollectionsSerializer.registerSerializers(UnmodifiableCollectionsSerializer.java:193)
java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800bb9840.invokeStaticInit(LambdaForm$DMH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800f8b040.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0ec40.guardWithCatch(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0e440.reinvoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0d840.guard(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0e440.reinvoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0d840.guard(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0e440.reinvoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c89c40.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0a440.invokeExact_MT(LambdaForm$MH)
app//org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800bdd440.invokeStatic(LambdaForm$DMH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0f440.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.Invokers$Holder.linkToCallSite(Invokers$Holder)
app//nextflow.util.KryoHelper.newInstance(SerializationHelper.groovy:91)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
app//groovy.lang.MetaClassImpl.invokeStaticMethod(MetaClassImpl.java:1586)
app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:611)
app//org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodN(ScriptBytecodeAdapter.java:182)
app//nextflow.util.KryoHelper$1.methodMissing(SerializationHelper.groovy)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
app//groovy.lang.MetaClassImpl.invokeMissingMethod(MetaClassImpl.java:924)
app//groovy.lang.MetaClassImpl.invokePropertyOrMissing(MetaClassImpl.java:1413)
app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1335)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800bff440.invokeInterface(LambdaForm$DMH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c9f840.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800cac040.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2ac40.guardWithCatch(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfc040.guard(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfc040.guard(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2dc40.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0a440.invokeExact_MT(LambdaForm$MH)
app//org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800bdd440.invokeStatic(LambdaForm$DMH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfa440.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.Invokers$Holder.linkToCallSite(Invokers$Holder)
app//nextflow.util.KryoHelper$1.initialValue(SerializationHelper.groovy:60)
app//nextflow.util.KryoHelper$1.initialValue(SerializationHelper.groovy)
java.base@15.0.2/java.lang.ThreadLocal.setInitialValue(ThreadLocal.java:195)
java.base@15.0.2/java.lang.ThreadLocal.get(ThreadLocal.java:172)
java.base@15.0.2/java.lang.invoke.DirectMethodHandle$Holder.invokeVirtual(DirectMethodHandle$Holder)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2ac40.guardWithCatch(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfc040.guard(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfc040.guard(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2dc40.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0a440.invokeExact_MT(LambdaForm$MH)
app//org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800bdd440.invokeStatic(LambdaForm$DMH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfa440.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.Invokers$Holder.linkToCallSite(Invokers$Holder)
app//nextflow.util.KryoHelper.kryo(SerializationHelper.groovy:79)
java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800b8fc40.invokeStatic(LambdaForm$DMH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2b440.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2ac40.guardWithCatch(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfc040.guard(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2dc40.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0a440.invokeExact_MT(LambdaForm$MH)
app//org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800bdd440.invokeStatic(LambdaForm$DMH)
java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfa440.invoke(LambdaForm$MH)
java.base@15.0.2/java.lang.invoke.Invokers$Holder.linkToCallSite(Invokers$Holder)
app//nextflow.util.KryoHelper.serialize(SerializationHelper.groovy:166)
app//nextflow.trace.TraceRecord.serialize(TraceRecord.groovy:573)
app//nextflow.cache.CacheDB.writeTaskEntry0(CacheDB.groovy:147)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
app//org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645)
app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628)
app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82)
app//nextflow.cache.CacheDB$_putTaskAsync_closure1.doCall(CacheDB.groovy:157)
app//nextflow.cache.CacheDB$_putTaskAsync_closure1.call(CacheDB.groovy)
app//groovyx.gpars.agent.AgentBase.onMessage(AgentBase.java:102)
app//groovyx.gpars.agent.Agent.handleMessage(Agent.java:84)
app//groovyx.gpars.agent.AgentCore$1.handleMessage(AgentCore.java:48)
app//groovyx.gpars.util.AsyncMessagingCore.run(AsyncMessagingCore.java:132)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1130)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Thread[main,5,main]
java.base@15.0.2/java.lang.Object.wait(Native Method)
java.base@15.0.2/java.lang.Thread.join(Thread.java:1303)
java.base@15.0.2/java.lang.Thread.join(Thread.java:1371)
app//nextflow.trace.AnsiLogObserver.onFlowComplete(AnsiLogObserver.groovy:506)
app//nextflow.Session.notifyFlowComplete(Session.groovy:1155)
app//nextflow.Session.shutdown0(Session.groovy:749)
app//nextflow.Session.destroy(Session.groovy:694)
app//nextflow.script.ScriptRunner.shutdown(ScriptRunner.groovy:260)
app//nextflow.script.ScriptRunner.execute(ScriptRunner.groovy:146)
app//nextflow.cli.CmdRun.run(CmdRun.groovy:376)
app//nextflow.cli.Launcher.run(Launcher.groovy:503)
app//nextflow.cli.Launcher.main(Launcher.groovy:658)
Thread[Notification Thread,9,system]
Thread[Actor Thread 9,5,main]
java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
Mar-23 11:46:24.470 [TaskFinalizer-1] WARN nextflow.util.SimpleAgent - Got an interrupted exception while taking agent result | java.lang.InterruptedException
Mar-23 11:46:24.658 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done
Mar-23 11:46:24.685 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye
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