Fix the help message for -c option (regarding chains w/o ID)
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@@ -94,7 +94,7 @@ def loadOptions():
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parser.add_option("-r", "--reference", dest="reference", default="neutral",
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help="setting which reference to use for stability calculations [neutral/low-pH]")
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parser.add_option("-c", "--chain", action="append", dest="chains",
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help="creating the protein with only a specified chain, note, chains without ID are labeled 'A' [all]")
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help='creating the protein with only a specified chain. Specify " " for chains without ID [all]')
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parser.add_option("-t", "--thermophile", action="append", dest="thermophiles",
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help="defining a thermophile filename; usually used in 'alignment-mutations'")
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parser.add_option("-a", "--alignment", action="append", dest="alignment",
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