From 5fe2ac0279a30e61c90ddc076386813eb94d93b6 Mon Sep 17 00:00:00 2001 From: Matvey Adzhigirey Date: Mon, 11 Aug 2014 16:37:29 -0700 Subject: [PATCH] Fix the help message for -c option (regarding chains w/o ID) --- propka/lib.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/propka/lib.py b/propka/lib.py index 0bbb0a6..668ec0a 100644 --- a/propka/lib.py +++ b/propka/lib.py @@ -94,7 +94,7 @@ def loadOptions(): parser.add_option("-r", "--reference", dest="reference", default="neutral", help="setting which reference to use for stability calculations [neutral/low-pH]") parser.add_option("-c", "--chain", action="append", dest="chains", - help="creating the protein with only a specified chain, note, chains without ID are labeled 'A' [all]") + help='creating the protein with only a specified chain. Specify " " for chains without ID [all]') parser.add_option("-t", "--thermophile", action="append", dest="thermophiles", help="defining a thermophile filename; usually used in 'alignment-mutations'") parser.add_option("-a", "--alignment", action="append", dest="alignment",