Improve Python 2 compatability with "future" print_function.

Use python3 version of the print function when running
under python2. Also added "from __future__ import division"
to a few more module files.

Source/ligand_pka_values.py

@@ -1,5 +1,8 @@
 #!/usr/bin/env python
 
+from __future__ import division
+from __future__ import print_function
+
 import Source.molecular_container, Source.calculations, Source.calculations, Source.parameters, Source.pdb, Source.lib, os, subprocess, sys
 
 class ligand_pka_values: