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Olamide Isreal 35dd4ab976 Add multi-method input file resolution for WES 
PVC mount is not available in k8s pods. Try multiple fallback
methods to retrieve input PDB: PVC path, s3-to-PVC conversion,
AWS CLI from MinIO, and curl from MinIO. Also add nf-amazon
plugin and s3:// default paths.
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.gitignore
Add WES pipeline configuration for pocketminer
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Dockerfile
Add WES pipeline configuration for pocketminer
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entrypoint.py
Add WES pipeline configuration for pocketminer
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main.nf
Add multi-method input file resolution for WES
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Makefile
Add WES pipeline configuration for pocketminer
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meta.yml
Add WES pipeline configuration for pocketminer
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nextflow.config
Add multi-method input file resolution for WES
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params.json
Add WES pipeline configuration for pocketminer
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README.md
Update file README.md
2025-12-17 00:49:56 +00:00

README.md

#Readme

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Description
PocketMiner - protein binding pocket prediction
Readme 59 KiB
Languages
Python 59.5%
Nextflow 22.1%
Makefile 11.5%
Dockerfile 6.9%