Olamide Isreal 8e3b2170e9 Clean up pipeline configuration ...

- Remove debug logging and dead PVC/direct-path fallbacks from main.nf
- Remove nf-amazon plugin and PVC storage config from nextflow.config
  (S3 access is handled by boto3 in the script)
- Simplify input download and output upload to single boto3 blocks

2026-03-23 18:27:50 +01:00

776 B

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