Olamide Isreal
8e3b2170e9
- Remove debug logging and dead PVC/direct-path fallbacks from main.nf - Remove nf-amazon plugin and PVC storage config from nextflow.config (S3 access is handled by boto3 in the script) - Simplify input download and output upload to single boto3 blocks
39 lines
776 B
Plaintext
39 lines
776 B
Plaintext
manifest {
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name = 'pocketminer-Nextflow'
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author = 'Olamide'
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homePage = 'https://github.com/Mickdub/gvp'
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description = 'Nextflow pipeline for PocketMiner - cryptic binding pocket prediction using geometric deep learning'
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mainScript = 'main.nf'
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version = '1.0.0'
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}
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params {
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pdb = "s3://omic/eureka/Pocketminer/1HSG.pdb"
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outdir = "s3://omic/eureka/Pocketminer/output"
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debug = false
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}
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profiles {
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standard {
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docker {
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enabled = true
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temp = 'auto'
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}
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}
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k8s {
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process {
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executor = 'k8s'
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container = 'harbor.cluster.omic.ai/omic/pocketminer:v2'
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}
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docker {
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enabled = true
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}
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}
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}
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process {
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cpus = 2
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memory = '8 GB'
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}
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