44 lines
1.0 KiB
Plaintext
44 lines
1.0 KiB
Plaintext
// Manifest for Nextflow metadata
|
|
manifest {
|
|
name = 'Foldseek-Nextflow'
|
|
author = 'Generated from Foldseek repository'
|
|
homePage = 'https://github.com/steineggerlab/foldseek'
|
|
description = 'Nextflow pipeline for Foldseek - Fast protein structure search and clustering'
|
|
mainScript = 'main.nf'
|
|
version = '1.0.0'
|
|
}
|
|
|
|
// Global default parameters
|
|
params {
|
|
query = "/mnt/OmicNAS/private/old/olamide/foldseek/input/1CRN.pdb"
|
|
target = "/mnt/OmicNAS/private/old/olamide/foldseek/input/"
|
|
outdir = "/mnt/OmicNAS/private/old/olamide/foldseek/output"
|
|
mode = "search"
|
|
sensitivity = 9.5
|
|
evalue = 0.001
|
|
threads = 4
|
|
alignment_type = 2
|
|
coverage = 0.0
|
|
format_output = "query,target,fident,alnlen,mismatch,gapopen,qstart,qend,tstart,tend,evalue,bits"
|
|
}
|
|
|
|
// Container configurations
|
|
docker {
|
|
enabled = true
|
|
runOptions = '-v /mnt:/mnt'
|
|
}
|
|
|
|
// Process configurations
|
|
process {
|
|
cpus = 4
|
|
memory = '16 GB'
|
|
}
|
|
|
|
// Execution configurations
|
|
executor {
|
|
$local {
|
|
cpus = 8
|
|
memory = '32 GB'
|
|
}
|
|
}
|