Remove --gpus all from containerOptions - WES handles GPU via engine_params
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main.nf
1
main.nf
@@ -11,7 +11,6 @@ params.n_samples = 5
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process FLOWDOCK {
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process FLOWDOCK {
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container 'harbor.cluster.omic.ai/omic/flowdock:latest'
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container 'harbor.cluster.omic.ai/omic/flowdock:latest'
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containerOptions '--rm --gpus all'
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publishDir params.outdir, mode: 'copy'
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publishDir params.outdir, mode: 'copy'
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stageInMode 'copy'
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stageInMode 'copy'
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