From da8af7bbc3bd69ce8d9c291240b93f658dfe8de6 Mon Sep 17 00:00:00 2001
From: omic <support@omic.ai>
Date: Mon, 16 Mar 2026 14:28:26 +0000
Subject: [PATCH] Remove --gpus all from containerOptions - WES handles GPU via
 engine_params

---
 main.nf | 1 -
 1 file changed, 1 deletion(-)

diff --git a/main.nf b/main.nf
index d95c74a..a091e31 100644
--- a/main.nf
+++ b/main.nf
@@ -11,7 +11,6 @@ params.n_samples = 5
 
 process FLOWDOCK {
     container 'harbor.cluster.omic.ai/omic/flowdock:latest'
-    containerOptions '--rm --gpus all'
     publishDir params.outdir, mode: 'copy'
     stageInMode 'copy'