Files
digital-trial/nextflow.config
Olamide Isreal 724c7d8987 Mount the dreamdock-data PVC in the k8s profile, and probe for it
The PVC holding chembl_36.db and protein_seq.zarr was never mounted into task
pods: WES's injected profile.config supplies no storage config (verified across
a full run's logs). Without /mnt/dreamdock-data, sqlite3 raises 'unable to open
database file' and every GET_FINAL_METABOLITES_STATIC task exits 1.

Restore storageClaimName/storageMountPath, and add a probe that reports what is
visible before opening sqlite so the failure names its own cause.
2026-07-28 11:04:46 +01:00

3.1 KiB
Executable File