Olamide Isreal
9e6a16c19b
Large reference/model files excluded from repo - to be staged to S3 or baked into Docker images.
25 lines
559 B
Plaintext
25 lines
559 B
Plaintext
nextflow.enable.dsl=2
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process RNA2PROTEXPRESSION {
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memory 2.GB
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accelerator 1
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container "${params.container_rna2protexpression}"
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label 'gpu_process'
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//publishDir "${params.outdir_rna2protexpression}", mode: 'copy'
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// debug true
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// maxForks 1
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input:
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path borzoi_tpm
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output:
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path "*Protein_Expression_log2.csv", emit: protrin_expression_scores
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script:
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"""
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. activate rna2protexpresson
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python3 /home/omic/rna2protexpression/rna2protexpression.py --borzoi_ouput ${borzoi_tpm}
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"""
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}
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