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digital-patients/Notes.txt
Olamide Isreal 9e6a16c19b Initial commit: digital-patients pipeline (clean, no large files)
Large reference/model files excluded from repo - to be staged to S3 or baked into Docker images.
2026-03-26 15:15:23 +01:00

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add rna splice step
fix borzoi - muatation step (main_borzoi;PREDICT_EXPRESSION;create_mut()) onyl POINT MUTATIONS add INDEL MUATAIONS
Borzoi can have alternativ chromosoms and chrUn_* as well, VCF2PROT CAN NOT have them. This will cause discrepancies in the code.
Name output files from borzoi ==> need to have patients name/id