omic/digital-patients
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983a2c3246cae4e9509df1c1c7b5f400e549ba30
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3 Commits

Author SHA1 Message Date
Olamide Isreal
bb11c598a0 Fix reassemble.nf: use Harbor-hosted container image 2026-03-26 18:32:03 +01:00
Olamide Isreal
cf6968d0c6 Fix reassemble.nf: remove executor local so it runs on k8s with PVC access 2026-03-26 18:28:42 +01:00
Olamide Isreal
88627edc25 Configure pipeline for WES execution on k8s cluster 
- Add main.nf as WES entry point with PVC-based paths
- Update nextflow.config with k8s/k8s_gpu profiles (eureka-pvc)
- Update params.json defaults to /omic/eureka/digital-patients/ paths
- Remove stageInMode 'copy' from corto and vcf2prot for k8s compat
- Add reassemble.nf for one-time chunk reassembly on PVC
 2026-03-26 17:58:28 +01:00