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• 4db4b2ac06 Debug stage_data.nf: test PVC access, sshpass install, and network connectivity main Olamide Isreal 2026-04-01 10:46:28 +01:00
• 8695fa01e9 Fix stage_data.nf: pure bash with conda install sshpass, set +e to avoid early exit Olamide Isreal 2026-04-01 10:27:46 +01:00
• c3c073e964 Fix stage_data.nf: use synthea:cudf container, Python-based downloads with sshpass/expect fallback Olamide Isreal 2026-04-01 10:03:56 +01:00
• 4b9152cf3c Fix stage_data.nf: use ubuntu container with apt-get, create dirs on PVC Olamide Isreal 2026-04-01 09:30:00 +01:00
• d1c471fa2a Add stage_data.nf to download large files directly to PVC from alien server Olamide Isreal 2026-04-01 09:10:53 +01:00
• 9c26a6e49c Debug PVC: check mounts and dir contents Olamide Isreal 2026-03-27 10:15:13 +01:00
• 83a79287b2 Simplified PVC debug script Olamide Isreal 2026-03-27 10:06:02 +01:00
• de44607dc4 Switch reassemble container to synthea:cudf (known working) Olamide Isreal 2026-03-26 19:37:19 +01:00
• 45b634acf0 Fix reassemble.nf: use find to discover _parts dirs dynamically Olamide Isreal 2026-03-26 19:33:44 +01:00
• 983a2c3246 Add debug_pvc.nf to inspect PVC contents Olamide Isreal 2026-03-26 19:27:11 +01:00
• bb11c598a0 Fix reassemble.nf: use Harbor-hosted container image Olamide Isreal 2026-03-26 18:32:03 +01:00
• cf6968d0c6 Fix reassemble.nf: remove executor local so it runs on k8s with PVC access Olamide Isreal 2026-03-26 18:28:42 +01:00
• 88627edc25 Configure pipeline for WES execution on k8s cluster Olamide Isreal 2026-03-26 17:58:28 +01:00
• 9e6a16c19b Initial commit: digital-patients pipeline (clean, no large files) Olamide Isreal 2026-03-26 15:15:23 +01:00