23 lines
771 B
Plaintext
23 lines
771 B
Plaintext
nextflow.enable.dsl=2
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// GLOBAL FPSIM2 PARAMS
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params.container = 'corto:latest'
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params.containerOptions = '--gpus all --rm -v /mnt:/mnt'
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params.outdir = '/mnt/OmicNAS/private/old/gabe/corto/outputs'
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params.project_name = 'test'
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// // INPUTS
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params.gene_expression_matrix = '/mnt/OmicNAS/private/old/gabe/corto/inputs/inmat.rda'
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params.centroid_list = '/mnt/OmicNAS/private/old/gabe/corto/inputs/centroids.rda'
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params.cnv_data = '/mnt/OmicNAS/private/old/gabe/corto/inputs/cnvmat.rda'
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include {CORTO} from './main.nf'
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workflow {
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gene_expression_matrix = Channel.fromPath(params.gene_expression_matrix)
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centroid_list = Channel.fromPath(params.centroid_list)
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cnv_data = Channel.fromPath(params.cnv_data)
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CORTO(gene_expression_matrix, centroid_list, cnv_data)
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}
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