Olamide Isreal
4bbc9822af
- Update main.nf: hardcode Harbor container image, add workflow block, use PVC mount path defaults, remove stageInMode copy and legacy params - Update nextflow.config: add k8s profile with container, add process resource limits, update manifest to point to Gitea - Update params.json: use s3:// prefixed paths for WES, remove container_corto, containerOptions, and project_name params
35 lines
673 B
Plaintext
Executable File
35 lines
673 B
Plaintext
Executable File
manifest {
|
|
name = 'corto'
|
|
author = 'omic'
|
|
homePage = 'https://trs-gitea.cluster.omic.ai/omic/corto'
|
|
description = 'CORTO - Correlation Tool for gene regulatory network analysis'
|
|
mainScript = 'main.nf'
|
|
version = '1.0.0'
|
|
defaultBranch = 'master'
|
|
}
|
|
|
|
params {
|
|
TPM = null
|
|
regulon = null
|
|
outdir = null
|
|
}
|
|
|
|
profiles {
|
|
standard {
|
|
docker {
|
|
enabled = true
|
|
temp = 'auto'
|
|
}
|
|
}
|
|
k8s {
|
|
process {
|
|
container = 'harbor.cluster.omic.ai/omic/digital-patients/corto:latest'
|
|
}
|
|
}
|
|
}
|
|
|
|
process {
|
|
cpus = 1
|
|
memory = '4 GB'
|
|
}
|