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b773e291d2f02d4863b17db7185eb89c18bd5f82
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Author SHA1 Message Date
Olamide Isreal
b773e291d2 Merge branch 'single' 2026-03-25 15:13:17 +01:00
Olamide Isreal
4bbc9822af Configure corto for WES k8s execution 
- Update main.nf: hardcode Harbor container image, add workflow block,
  use PVC mount path defaults, remove stageInMode copy and legacy params
- Update nextflow.config: add k8s profile with container, add process
  resource limits, update manifest to point to Gitea
- Update params.json: use s3:// prefixed paths for WES, remove
  container_corto, containerOptions, and project_name params
 2026-03-25 15:12:40 +01:00
olamide24
aaa43a4d54 Update CORTO pipeline with params.json and workflow improvements 2025-03-28 14:45:49 -07:00
Gabe Richman
b408cfd4dd updated readme with specific details around which R script code was implemented. 2024-12-16 15:06:25 +00:00
Gabe Richman
21d77e3faa Added custom data prep and matrix combination steps meant to perform similar but improved functions to the R code. Added readme detailing the code. 2024-12-16 15:03:40 +00:00
Gabe Richman
bf380f2768 corto up and running! 2023-12-31 14:00:43 -08:00
Gabe Richman
0018149d36 initial dockerfile commit. Untested. 2023-12-12 16:56:30 -08:00
Gabe Richman
e81d27d196 Initial commit 2023-12-13 00:04:51 +00:00