chai-lab/nextflow.config

docker {
    enabled = true
}

process {
    container = 'harbor.cluster.omic.ai/omic/chai1:latest'
    memory = '32 GB'
    cpus = 4
}

profiles {
    standard {
        docker {
            temp = 'auto'
            runOptions = '--gpus all'
        }
    }

    k8s {
        process {
            executor = 'k8s'
        }
        k8s {
            storageClaimName = 'eureka-pvc'
            storageMountPath = '/omic/eureka'
            namespace = 'nextflow'
            serviceAccount = 'nextflow'
        }
    }

    k8s_gpu {
        process {
            executor = 'k8s'
            pod = [[nodeSelector: 'nvidia.com/gpu.present=true'], [env: 'NVIDIA_VISIBLE_DEVICES', value: 'all']]
            accelerator = [request: 1, type: 'nvidia.com/gpu']
        }
        k8s {
            storageClaimName = 'eureka-pvc'
            storageMountPath = '/omic/eureka'
            namespace = 'nextflow'
            serviceAccount = 'nextflow'
        }
    }
}