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6fd165b6190db3c07fdc03dfc231e5a00d299210
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Author SHA1 Message Date
Olamide Isreal
6fd165b619 Fix Dockerfile verification: use generic transformers import check 
EsmModel was reorganized in newer transformers versions.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-16 13:58:35 +01:00
Olamide Isreal
895f3c5f75 Pin transformers<5.0 for EsmModel compatibility 
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-16 13:39:57 +01:00
Olamide Isreal
5ac0bfc25e Optimize Dockerfile: use pytorch base image to reduce size 
Switch from nvidia/cuda base + manual PyTorch install to
pytorch/pytorch:2.6.0-cuda12.4-cudnn9-runtime base image.
This avoids the ~15GB build that exceeds Docker disk limits.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-16 13:24:36 +01:00
Olamide Isreal
7fbabfee39 Update input/output paths to match DRS workspace (s3://omic/eureka/chai1) 
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-16 13:09:19 +01:00
Olamide Isreal
f971fd0e21 Initial commit: Chai-1 protein structure prediction pipeline for WES 
- Nextflow pipeline using chai1 Docker image from Harbor
- S3-based input/output paths (s3://omic/eureka/chai-lab/)
- GPU-accelerated protein folding with MSA support

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-16 12:55:08 +01:00