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Update input/output paths to match DRS workspace (s3://omic/eureka/chai1)

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Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
This commit is contained in:
Olamide Isreal
2026-03-16 13:09:19 +01:00
parent f971fd0e21
commit 7fbabfee39
2 changed files with 6 additions and 6 deletions
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4
main.nf
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@@ -1,8 +1,8 @@
#!/usr/bin/env nextflow #!/usr/bin/env nextflow
nextflow.enable.dsl=2 nextflow.enable.dsl=2
params.input_dir = 's3://omic/eureka/chai-lab/input' params.input_dir = 's3://omic/eureka/chai1'
params.outdir = 's3://omic/eureka/chai-lab/output' params.outdir = 's3://omic/eureka/chai1/output'
params.use_msa = true params.use_msa = true
params.msa_server = 'https://api.colabfold.com' params.msa_server = 'https://api.colabfold.com'
params.num_samples = 5 params.num_samples = 5

8
params.json
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@@ -3,12 +3,12 @@
"input_dir": { "input_dir": {
"type": "folder", "type": "folder",
"description": "Directory containing FASTA files and optional restraints", "description": "Directory containing FASTA files and optional restraints",
"default": "s3://omic/eureka/chai-lab/input", "default": "s3://omic/eureka/chai1",
"required": true, "required": true,
"pipeline_io": "input", "pipeline_io": "input",
"var_name": "params.input_dir", "var_name": "params.input_dir",
"examples": [ "examples": [
"s3://omic/eureka/chai-lab/input" "s3://omic/eureka/chai1"
], ],
"pattern": ".*", "pattern": ".*",
"enum": [], "enum": [],
@@ -18,12 +18,12 @@
"outdir": { "outdir": {
"type": "folder", "type": "folder",
"description": "Directory for chai1 prediction results", "description": "Directory for chai1 prediction results",
"default": "s3://omic/eureka/chai-lab/output", "default": "s3://omic/eureka/chai1/output",
"required": true, "required": true,
"pipeline_io": "output", "pipeline_io": "output",
"var_name": "params.outdir", "var_name": "params.outdir",
"examples": [ "examples": [
"s3://omic/eureka/chai-lab/output" "s3://omic/eureka/chai1/output"
], ],
"pattern": ".*", "pattern": ".*",
"enum": [], "enum": [],