Files
bioemu/nextflow.config
Olamide Isreal 04a580a3c0 Simplify nextflow.config for WES compatibility
Remove params block (defined in main.nf) and minimize profiles
to avoid StackOverflowError when WES injects profile.config via -C flag.
2026-03-26 14:20:32 +01:00

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manifest {
name = 'bioemu'
author = 'Olamide'
description = 'BioEmu - Biomolecular Emulator for protein structure sampling and binding energy analysis'
mainScript = 'main.nf'
version = '1.0.0'
}
docker {
enabled = true
}
process {
container = 'harbor.cluster.omic.ai/omic/bioemu:latest'
cpus = 2
memory = '8 GB'
}
profiles {
k8s {
process {
executor = 'k8s'
}
}
k8s_gpu {
process {
executor = 'k8s'
}
}
}