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ce1f5dff035af9e76b6baeca7d2f6b79ed09d0be
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Author SHA1 Message Date
Olamide Isreal
ce1f5dff03 Fix StackOverflowError: use Channel.fromPath instead of Channel.fromList with file() 2026-03-26 14:30:02 +01:00
Olamide Isreal
04a580a3c0 Simplify nextflow.config for WES compatibility 
Remove params block (defined in main.nf) and minimize profiles
to avoid StackOverflowError when WES injects profile.config via -C flag.
 2026-03-26 14:20:32 +01:00
Olamide Isreal
f776745722 Configure bioemu for WES deployment 
- Update main.nf: Harbor container image, PVC mount paths, remove containerOptions and stageInMode
- Update nextflow.config: Add k8s/k8s_gpu profiles, minimal config for WES injection
- Update params.json: Correct paths for eureka PVC
- Update Dockerfile.wes: CUDA base image for GPU support
 2026-03-26 14:11:57 +01:00
Olamide Isreal
ca4ceae21e Add WES Dockerfile and fix binding script copy path 2026-03-26 10:50:40 +01:00
olamide24
83525663c9 Implement interface-adaptive binding energy calculator 2025-03-06 12:51:36 -08:00
olamide24
2cfbf64e92 Add BioEmu Nextflow pipeline implementation 2025-03-04 09:38:55 -08:00