Mar-23 11:39:29.066 [main] DEBUG nextflow.cli.Launcher - $> nextflow run main.nf --disease_name 'Multiple Sclerosis' --population 10
Mar-23 11:39:29.325 [main] DEBUG nextflow.cli.CmdRun - N E X T F L O W  ~  version 24.10.5
Mar-23 11:39:29.404 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/Users/richman/.nextflow/plugins; core-plugins: nf-amazon@2.9.2,nf-azure@1.10.2,nf-cloudcache@0.4.2,nf-codecommit@0.2.2,nf-console@1.1.4,nf-google@1.15.4,nf-tower@1.9.3,nf-wave@1.7.4
Mar-23 11:39:29.449 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
Mar-23 11:39:29.451 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
Mar-23 11:39:29.462 [main] INFO  org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode
Mar-23 11:39:29.488 [main] INFO  org.pf4j.AbstractPluginManager - No plugins
Mar-23 11:39:29.572 [main] DEBUG nextflow.config.ConfigBuilder - Found config local: /Users/richman/workspace/synthea-alldiseases/nextflow.config
Mar-23 11:39:29.583 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /Users/richman/workspace/synthea-alldiseases/nextflow.config
Mar-23 11:39:29.682 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /Users/richman/.nextflow/secrets/store.json
Mar-23 11:39:29.689 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@19542407] - activable => nextflow.secret.LocalSecretsProvider@19542407
Mar-23 11:39:29.780 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard`
Mar-23 11:39:31.723 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 from script declaration
Mar-23 11:39:31.763 [main] DEBUG nextflow.cli.CmdRun - Launching `main.nf` [astonishing_wozniak] DSL2 - revision: ab2562e4a1
Mar-23 11:39:31.770 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[]
Mar-23 11:39:31.770 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[]
Mar-23 11:39:31.897 [main] DEBUG nextflow.Session - Session UUID: cfdf2b28-2b73-4c6f-ac03-fc646888e313
Mar-23 11:39:31.898 [main] DEBUG nextflow.Session - Run name: astonishing_wozniak
Mar-23 11:39:31.899 [main] DEBUG nextflow.Session - Executor pool size: 10
Mar-23 11:39:31.917 [main] DEBUG nextflow.file.FilePorter - File porter settings maxRetries=3; maxTransfers=50; pollTimeout=null
Mar-23 11:39:31.928 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=30; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
Mar-23 11:39:31.993 [main] DEBUG nextflow.cli.CmdRun - 
  Version: 24.10.5 build 5935
  Created: 04-03-2025 17:55 UTC (09:55 PDT)
  System: Mac OS X 10.16
  Runtime: Groovy 4.0.23 on OpenJDK 64-Bit Server VM 15.0.2+7-27
  Encoding: UTF-8 (UTF-8)
  Process: 72268@MacBookPro.localdomain [192.168.1.157]
  CPUs: 10 - Mem: 32 GB (16.7 MB) - Swap: 6 GB (1.6 GB)
Mar-23 11:39:32.031 [main] DEBUG nextflow.Session - Work-dir: /Users/richman/workspace/synthea-alldiseases/work [Mac OS X]
Mar-23 11:39:32.032 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /Users/richman/workspace/synthea-alldiseases/bin
Mar-23 11:39:32.054 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[]
Mar-23 11:39:32.072 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory
Mar-23 11:39:32.148 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory
Mar-23 11:39:32.180 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 11; maxThreads: 1000
Mar-23 11:39:32.248 [main] DEBUG nextflow.Session - Session start
Mar-23 11:39:32.255 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow started -- trace file: /Users/richman/workspace/synthea-alldiseases/trace.txt
Mar-23 11:39:33.528 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
Mar-23 11:39:33.813 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: local
Mar-23 11:39:33.814 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Mar-23 11:39:33.827 [main] DEBUG nextflow.executor.Executor - [warm up] executor > local
Mar-23 11:39:33.835 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=10; memory=32 GB; capacity=10; pollInterval=100ms; dumpInterval=5m
Mar-23 11:39:33.843 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local)
Mar-23 11:39:33.995 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: local
Mar-23 11:39:33.996 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Mar-23 11:39:34.025 [main] DEBUG nextflow.Session - Workflow process names [dsl2]: checkAndGetModule, generatePatients
Mar-23 11:39:34.027 [main] DEBUG nextflow.Session - Igniting dataflow network (2)
Mar-23 11:39:34.028 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > checkAndGetModule
Mar-23 11:39:34.028 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > generatePatients
Mar-23 11:39:34.029 [main] DEBUG nextflow.script.ScriptRunner - Parsed script files:
  Script_b4244dfae6385692: /Users/richman/workspace/synthea-alldiseases/main.nf
Mar-23 11:39:34.030 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination 
Mar-23 11:39:34.030 [main] DEBUG nextflow.Session - Session await
Mar-23 11:39:34.443 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Mar-23 11:39:34.448 [Task submitter] INFO  nextflow.Session - [2c/9d944d] Submitted process > checkAndGetModule
Mar-23 11:39:35.759 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: checkAndGetModule; status: COMPLETED; exit: 1; error: -; workDir: /Users/richman/workspace/synthea-alldiseases/work/2c/9d944dfd494af06885892ba6e4f300]
Mar-23 11:39:35.765 [Task monitor] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'TaskFinalizer' minSize=10; maxSize=30; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
Mar-23 11:39:35.795 [TaskFinalizer-1] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=checkAndGetModule; work-dir=/Users/richman/workspace/synthea-alldiseases/work/2c/9d944dfd494af06885892ba6e4f300
  error [nextflow.exception.ProcessFailedException]: Process `checkAndGetModule` terminated with an error exit status (1)
Mar-23 11:39:35.835 [TaskFinalizer-1] ERROR nextflow.processor.TaskProcessor - Error executing process > 'checkAndGetModule'

Caused by:
  Process `checkAndGetModule` terminated with an error exit status (1)


Command executed:

  echo "Looking for module at /app/modules/multiple_sclerosis.json"
  if [ -f "/app/modules/multiple_sclerosis.json" ]; then
      echo "Module exists, copying..."
      cp "/app/modules/multiple_sclerosis.json" .
  else
      echo "Module not found, generating..."
      python3 /app/module_generator/module_generator.py --disease "Multiple Sclerosis" --output "multiple_sclerosis.json"
      if [ -f "multiple_sclerosis.json" ]; then
          echo "Successfully generated module"
      else
          echo "Error: Failed to generate module"
          exit 1
      fi
  fi

Command exit status:
  1

Command output:
  Looking for module at /app/modules/multiple_sclerosis.json
  Module not found, generating...

Command error:
  Looking for module at /app/modules/multiple_sclerosis.json
  Module not found, generating...
  Traceback (most recent call last):
    File "/app/module_generator/module_generator.py", line 90, in <module>
      client = anthropic.Client(api_key=api_key)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/opt/venv/lib/python3.12/site-packages/anthropic/_client.py", line 113, in __init__
      super().__init__(
    File "/opt/venv/lib/python3.12/site-packages/anthropic/_base_client.py", line 758, in __init__
      self._client = http_client or SyncHttpxClientWrapper(
                                    ^^^^^^^^^^^^^^^^^^^^^^^
  TypeError: Client.__init__() got an unexpected keyword argument 'proxies'

Work dir:
  /Users/richman/workspace/synthea-alldiseases/work/2c/9d944dfd494af06885892ba6e4f300

Container:
  synthea-module-generator

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
Mar-23 11:39:35.906 [main] DEBUG nextflow.Session - Session await > all processes finished
Mar-23 11:39:35.908 [TaskFinalizer-1] DEBUG nextflow.Session - Session aborted -- Cause: Process `checkAndGetModule` terminated with an error exit status (1)
Mar-23 11:39:36.005 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local) - terminating tasks monitor poll loop
Mar-23 11:39:36.006 [main] DEBUG nextflow.Session - Session await > all barriers passed
Mar-23 11:39:36.050 [main] DEBUG n.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=0; failedCount=1; ignoredCount=0; cachedCount=0; pendingCount=0; submittedCount=0; runningCount=0; retriesCount=0; abortedCount=0; succeedDuration=0ms; failedDuration=1.3s; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=1; peakCpus=1; peakMemory=0; ]
Mar-23 11:39:36.063 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow completed -- saving trace file
Mar-23 11:39:36.063 [TaskFinalizer-1] DEBUG nextflow.Session - 
Thread[Actor Thread 4,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[Reference Handler,10,system]
  java.base@15.0.2/java.lang.ref.Reference.waitForReferencePendingList(Native Method)
  java.base@15.0.2/java.lang.ref.Reference.processPendingReferences(Reference.java:241)
  java.base@15.0.2/java.lang.ref.Reference$ReferenceHandler.run(Reference.java:213)

Thread[Task submitter,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341)
  java.base@15.0.2/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:505)
  java.base@15.0.2/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3137)
  java.base@15.0.2/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1614)
  app//nextflow.processor.TaskPollingMonitor.awaitTasks(TaskPollingMonitor.groovy:388)
  app//nextflow.processor.TaskPollingMonitor.submitLoop(TaskPollingMonitor.groovy:412)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
  java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
  app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
  app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
  app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
  app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017)
  app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
  app//groovy.lang.Closure.call(Closure.java:433)
  app//groovy.lang.Closure.call(Closure.java:412)
  app//groovy.lang.Closure.run(Closure.java:505)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[TaskFinalizer-1,5,main]
  java.base@15.0.2/java.lang.Thread.dumpThreads(Native Method)
  java.base@15.0.2/java.lang.Thread.getAllStackTraces(Thread.java:1649)
  app//nextflow.util.SysHelper.dumpThreads(SysHelper.groovy:188)
  app//nextflow.Session.abort(Session.groovy:800)
  app//nextflow.Session.fault(Session.groovy:766)
  app//nextflow.processor.TaskPollingMonitor.finalizeTask(TaskPollingMonitor.groovy:695)
  app//nextflow.processor.TaskPollingMonitor.safeFinalizeTask(TaskPollingMonitor.groovy:678)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
  java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
  app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
  app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
  app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
  app//org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645)
  app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628)
  app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82)
  app//nextflow.processor.TaskPollingMonitor$_checkTaskStatus_lambda8.doCall(TaskPollingMonitor.groovy:668)
  app//nextflow.processor.TaskPollingMonitor$$Lambda$437/0x0000000800f4c0e8.run(Unknown Source)
  java.base@15.0.2/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
  java.base@15.0.2/java.util.concurrent.FutureTask.run(FutureTask.java:264)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1130)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[Actor Thread 1,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[Actor Thread 2,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[Actor Thread 7,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[Actor Thread 9,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[Actor Thread 5,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[process reaper,10,system]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:252)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:462)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue.poll(SynchronousQueue.java:937)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1055)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[Common-Cleaner,8,InnocuousThreadGroup]
  java.base@15.0.2/java.lang.Object.wait(Native Method)
  java.base@15.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  java.base@15.0.2/jdk.internal.ref.CleanerImpl.run(CleanerImpl.java:148)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)
  java.base@15.0.2/jdk.internal.misc.InnocuousThread.run(InnocuousThread.java:134)

Thread[Notification Thread,9,system]

Thread[Actor Thread 11,5,main]
  java.base@15.0.2/java.util.jar.Attributes.get(Attributes.java:104)
  java.base@15.0.2/java.util.jar.Attributes.getValue(Attributes.java:140)
  java.base@15.0.2/jdk.internal.loader.BuiltinClassLoader.definePackage(BuiltinClassLoader.java:928)
  java.base@15.0.2/jdk.internal.loader.BuiltinClassLoader.defineOrCheckPackage(BuiltinClassLoader.java:844)
  java.base@15.0.2/jdk.internal.loader.ClassLoaders$AppClassLoader.defineOrCheckPackage(ClassLoaders.java:191)
  java.base@15.0.2/jdk.internal.loader.BuiltinClassLoader.defineClass(BuiltinClassLoader.java:812)
  java.base@15.0.2/jdk.internal.loader.BuiltinClassLoader.findClassOnClassPathOrNull(BuiltinClassLoader.java:723)
  java.base@15.0.2/jdk.internal.loader.BuiltinClassLoader.loadClassOrNull(BuiltinClassLoader.java:646)
  java.base@15.0.2/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:604)
  java.base@15.0.2/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:168)
  java.base@15.0.2/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
  app//nextflow.util.KryoHelper.newInstance(SerializationHelper.groovy:91)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
  java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
  app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
  app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
  app//groovy.lang.MetaClassImpl.invokeStaticMethod(MetaClassImpl.java:1586)
  app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:611)
  app//org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodN(ScriptBytecodeAdapter.java:182)
  app//nextflow.util.KryoHelper$1.methodMissing(SerializationHelper.groovy)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
  java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
  app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
  app//groovy.lang.MetaClassImpl.invokeMissingMethod(MetaClassImpl.java:924)
  app//groovy.lang.MetaClassImpl.invokePropertyOrMissing(MetaClassImpl.java:1413)
  app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1335)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
  java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800bff440.invokeInterface(LambdaForm$DMH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c9f840.invoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800cae440.invoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2ac40.guardWithCatch(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfc040.guard(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfc040.guard(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2dc40.invoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0a440.invokeExact_MT(LambdaForm$MH)
  app//org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
  java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800bdd440.invokeStatic(LambdaForm$DMH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfa440.invoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.Invokers$Holder.linkToCallSite(Invokers$Holder)
  app//nextflow.util.KryoHelper$1.initialValue(SerializationHelper.groovy:60)
  app//nextflow.util.KryoHelper$1.initialValue(SerializationHelper.groovy)
  java.base@15.0.2/java.lang.ThreadLocal.setInitialValue(ThreadLocal.java:195)
  java.base@15.0.2/java.lang.ThreadLocal.get(ThreadLocal.java:172)
  java.base@15.0.2/java.lang.invoke.DirectMethodHandle$Holder.invokeVirtual(DirectMethodHandle$Holder)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2ac40.guardWithCatch(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfc040.guard(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfc040.guard(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2dc40.invoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0a440.invokeExact_MT(LambdaForm$MH)
  app//org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
  java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800bdd440.invokeStatic(LambdaForm$DMH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfa440.invoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.Invokers$Holder.linkToCallSite(Invokers$Holder)
  app//nextflow.util.KryoHelper.kryo(SerializationHelper.groovy:79)
  java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800b8fc40.invokeStatic(LambdaForm$DMH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2b440.invoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2ac40.guardWithCatch(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfc040.guard(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfbc40.reinvoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c2dc40.invoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0a440.invokeExact_MT(LambdaForm$MH)
  app//org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
  java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800bdd440.invokeStatic(LambdaForm$DMH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfa440.invoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.Invokers$Holder.linkToCallSite(Invokers$Holder)
  app//nextflow.util.KryoHelper.serialize(SerializationHelper.groovy:166)
  app//nextflow.trace.TraceRecord.serialize(TraceRecord.groovy:573)
  app//nextflow.cache.CacheDB.writeTaskEntry0(CacheDB.groovy:147)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
  java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
  app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
  app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
  app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
  app//org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645)
  app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628)
  app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82)
  app//nextflow.cache.CacheDB$_putTaskAsync_closure1.doCall(CacheDB.groovy:157)
  app//nextflow.cache.CacheDB$_putTaskAsync_closure1.call(CacheDB.groovy)
  app//groovyx.gpars.agent.AgentBase.onMessage(AgentBase.java:102)
  app//groovyx.gpars.agent.Agent.handleMessage(Agent.java:84)
  app//groovyx.gpars.agent.AgentCore$1.handleMessage(AgentCore.java:48)
  app//groovyx.gpars.util.AsyncMessagingCore.run(AsyncMessagingCore.java:132)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1130)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[Finalizer,8,system]
  java.base@15.0.2/java.lang.Object.wait(Native Method)
  java.base@15.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  java.base@15.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:176)
  java.base@15.0.2/java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:170)

Thread[Thread-1,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:252)
  java.base@15.0.2/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:1661)
  java.base@15.0.2/java.util.concurrent.LinkedBlockingDeque.pollFirst(LinkedBlockingDeque.java:515)
  java.base@15.0.2/java.util.concurrent.LinkedBlockingDeque.poll(LinkedBlockingDeque.java:677)
  app//nextflow.util.SimpleAgent.run(SimpleAgent.groovy:89)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
  java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
  app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
  app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
  app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
  app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017)
  app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
  app//groovy.lang.Closure.call(Closure.java:433)
  app//groovy.lang.Closure.call(Closure.java:412)
  app//groovy.lang.Closure.run(Closure.java:505)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[Actor Thread 6,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[Actor Thread 8,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[pool-2-thread-1,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341)
  java.base@15.0.2/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:505)
  java.base@15.0.2/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3137)
  java.base@15.0.2/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1614)
  java.base@15.0.2/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[Signal Dispatcher,9,system]

Thread[Actor Thread 10,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[AnsiLogObserver,5,main]
  java.base@15.0.2/java.lang.Object.wait(Native Method)
  app//nextflow.trace.AnsiLogObserver.render0(AnsiLogObserver.groovy:185)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  java.base@15.0.2/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64)
  java.base@15.0.2/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  java.base@15.0.2/java.lang.reflect.Method.invoke(Method.java:564)
  app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
  app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
  app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
  app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017)
  app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)
  app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
  app//groovy.lang.Closure.call(Closure.java:433)
  app//groovy.lang.Closure.call(Closure.java:412)
  app//groovy.lang.Closure.run(Closure.java:505)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Thread[main,5,main]
  java.base@15.0.2/sun.invoke.util.VerifyType.isNullConversion(VerifyType.java:70)
  java.base@15.0.2/java.lang.invoke.InvokerBytecodeGenerator.emitImplicitConversion(InvokerBytecodeGenerator.java:605)
  java.base@15.0.2/java.lang.invoke.InvokerBytecodeGenerator.emitPushArgument(InvokerBytecodeGenerator.java:1691)
  java.base@15.0.2/java.lang.invoke.InvokerBytecodeGenerator.emitPushArguments(InvokerBytecodeGenerator.java:1676)
  java.base@15.0.2/java.lang.invoke.InvokerBytecodeGenerator.emitStaticInvoke(InvokerBytecodeGenerator.java:1102)
  java.base@15.0.2/java.lang.invoke.InvokerBytecodeGenerator.addMethod(InvokerBytecodeGenerator.java:916)
  java.base@15.0.2/java.lang.invoke.InvokerBytecodeGenerator.generateCustomizedCodeBytes(InvokerBytecodeGenerator.java:806)
  java.base@15.0.2/java.lang.invoke.InvokerBytecodeGenerator.generateCustomizedCode(InvokerBytecodeGenerator.java:764)
  java.base@15.0.2/java.lang.invoke.LambdaForm.compileToBytecode(LambdaForm.java:872)
  java.base@15.0.2/java.lang.invoke.LambdaForm.customize(LambdaForm.java:507)
  java.base@15.0.2/java.lang.invoke.MethodHandle.customize(MethodHandle.java:1753)
  java.base@15.0.2/java.lang.invoke.Invokers.maybeCustomize(Invokers.java:604)
  java.base@15.0.2/java.lang.invoke.Invokers.checkCustomized(Invokers.java:595)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800c0a440.invokeExact_MT(LambdaForm$MH)
  app//org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
  java.base@15.0.2/java.lang.invoke.LambdaForm$DMH/0x0000000800bdd440.invokeStatic(LambdaForm$DMH)
  java.base@15.0.2/java.lang.invoke.LambdaForm$MH/0x0000000800bfac40.invoke(LambdaForm$MH)
  java.base@15.0.2/java.lang.invoke.Invokers$Holder.linkToCallSite(Invokers$Holder)
  app//nextflow.util.LoggerHelper$ConsoleLoggerFilter.decide(LoggerHelper.groovy:425)
  app//nextflow.util.LoggerHelper$ConsoleLoggerFilter.decide(LoggerHelper.groovy)
  app//ch.qos.logback.core.spi.FilterAttachableImpl.getFilterChainDecision(FilterAttachableImpl.java:57)
  app//ch.qos.logback.core.AppenderBase.getFilterChainDecision(AppenderBase.java:132)
  app//ch.qos.logback.core.AppenderBase.doAppend(AppenderBase.java:78)
  app//ch.qos.logback.core.spi.AppenderAttachableImpl.appendLoopOnAppenders(AppenderAttachableImpl.java:51)
  app//ch.qos.logback.classic.Logger.appendLoopOnAppenders(Logger.java:272)
  app//ch.qos.logback.classic.Logger.callAppenders(Logger.java:259)
  app//ch.qos.logback.classic.Logger.buildLoggingEventAndAppend(Logger.java:426)
  app//ch.qos.logback.classic.Logger.filterAndLog_0_Or3Plus(Logger.java:386)
  app//ch.qos.logback.classic.Logger.debug(Logger.java:487)
  app//nextflow.trace.WorkflowStatsObserver.onFlowComplete(WorkflowStatsObserver.groovy:48)
  app//nextflow.Session.notifyFlowComplete(Session.groovy:1155)
  app//nextflow.Session.shutdown0(Session.groovy:749)
  app//nextflow.Session.destroy(Session.groovy:694)
  app//nextflow.script.ScriptRunner.shutdown(ScriptRunner.groovy:260)
  app//nextflow.script.ScriptRunner.execute(ScriptRunner.groovy:146)
  app//nextflow.cli.CmdRun.run(CmdRun.groovy:376)
  app//nextflow.cli.Launcher.run(Launcher.groovy:503)
  app//nextflow.cli.Launcher.main(Launcher.groovy:658)

Thread[Actor Thread 3,5,main]
  java.base@15.0.2/jdk.internal.misc.Unsafe.park(Native Method)
  java.base@15.0.2/java.util.concurrent.locks.LockSupport.park(LockSupport.java:211)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361)
  java.base@15.0.2/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1056)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1116)
  java.base@15.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  java.base@15.0.2/java.lang.Thread.run(Thread.java:832)

Mar-23 11:39:36.068 [TaskFinalizer-1] WARN  nextflow.util.SimpleAgent - Got an interrupted exception while taking agent result | java.lang.InterruptedException
Mar-23 11:39:36.216 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done
Mar-23 11:39:36.270 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye