manifest {
    name = 'synthea-alldiseases'
    description = 'Synthea synthetic patient generator pipeline'
    mainScript = 'main.nf'
    version = '1.0.0'
}

params {
    disease_name = null
    outdir = null
    population = 10
    gender = 0.5
    min_age = 0
    max_age = 90
    seed = null
}

profiles {
    standard {
        docker {
            enabled = true
            temp = 'auto'
        }
    }

    k8s {
        process {
            executor = 'k8s'
            container = 'harbor.cluster.omic.ai/omic/synthea-alldiseases:latest'
        }
        docker {
            enabled = true
        }
        k8s {
            storageClaimName = 'eureka-pvc'
            storageMountPath = '/omic/eureka'
        }
    }
}

process {
    cpus = 2
    memory = '4 GB'
}