Fixed patient generation with separate script approach

main.nf

@@ -21,7 +21,7 @@ if (envFile.exists()) {
 
 // Default parameters
 params.disease_name = null        // Disease name to generate patients for
-params.output_dir = "output"      // Output directory
+params.output_dir = "/mnt/OmicNAS/private/old/olamide/synthea/output/new"      // Output directory
 params.modules_dir = "src/main/resources/modules"    // Directory for module files
 params.population = 100           // Number of patients to generate
 params.gender = 0.5               // Decimal representing proportion female (0.0-1.0)
@@ -125,4 +125,4 @@ workflow {
     
     // Then generate patients
     generatePatients(params.disease_name, checkAndGetModule.out.module_file)
-}
+}