omic/synthea-alldiseases
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Trying to fix basic functionality again.

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This commit is contained in:
Gabe Richman
2025-03-23 11:53:47 -07:00
parent ebda48190a
commit 2141e81f42
406 changed files with 173963 additions and 69 deletions
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14
scripts/.nextflow.log Normal file
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Mar-20 17:36:01.178 [main] DEBUG nextflow.cli.Launcher - $> nextflow run main.nf --disease_name Migraine --generate_patients true --population 100 --gender 0.6 --modules_dir modules
Mar-20 17:36:01.428 [main] DEBUG nextflow.cli.CmdRun - N E X T F L O W ~ version 24.10.5
Mar-20 17:36:01.492 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/Users/richman/.nextflow/plugins; core-plugins: nf-amazon@2.9.2,nf-azure@1.10.2,nf-cloudcache@0.4.2,nf-codecommit@0.2.2,nf-console@1.1.4,nf-google@1.15.4,nf-tower@1.9.3,nf-wave@1.7.4
Mar-20 17:36:01.528 [main] INFO o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
Mar-20 17:36:01.529 [main] INFO o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
Mar-20 17:36:01.538 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode
Mar-20 17:36:01.559 [main] INFO org.pf4j.AbstractPluginManager - No plugins
Mar-20 17:36:01.590 [main] DEBUG nextflow.scm.ProviderConfig - Using SCM config path: /Users/richman/.nextflow/scm
Mar-20 17:36:01.624 [main] DEBUG nextflow.cli.Launcher - Operation aborted
nextflow.exception.AbortOperationException: Cannot find script file: main.nf
at nextflow.cli.CmdRun.getScriptFile(CmdRun.groovy:536)
at nextflow.cli.CmdRun.run(CmdRun.groovy:325)
at nextflow.cli.Launcher.run(Launcher.groovy:503)
at nextflow.cli.Launcher.main(Launcher.groovy:658)