Trying to fix basic functionality again.

docker-compose.yml

@@ -0,0 +1,47 @@
+version: '3.8'
+
+services:
+  synthea:
+    build:
+      context: .
+      dockerfile: Dockerfile
+    volumes:
+      - ./modules:/app/modules:ro         # Mount modules directory read-only
+      - ./output:/app/output              # Mount output directory for patient data
+      - ./.env:/app/.env:ro               # Mount environment variables file
+    environment:
+      - ANTHROPIC_API_KEY=${ANTHROPIC_API_KEY}
+    working_dir: /app
+    command: tail -f /dev/null  # Keep container running
+    healthcheck:
+      test: ["CMD", "/app/healthcheck.sh"]
+      interval: 30s
+      timeout: 10s
+      retries: 3
+      start_period: 5s
+    restart: unless-stopped
+    ports:
+      - "8080:8080"  # Only needed if you want to access the Synthea web interface
+
+  module-generator:
+    build:
+      context: .
+      dockerfile: Dockerfile
+    volumes:
+      - ./modules:/app/modules            # Mount modules directory for writing
+      - ./module_generator:/app/module_generator
+      - ./src:/app/src
+      - ./scripts:/app/scripts
+      - ./.env:/app/.env:ro               # Mount environment variables file
+    environment:
+      - ANTHROPIC_API_KEY=${ANTHROPIC_API_KEY}
+    working_dir: /app
+    command: python3 /app/module_generator/run_module_generator.py --batch-size 5 --max-modules 10 --prioritize
+    depends_on:
+      - synthea
+    profiles:
+      - generator  # This service won't start by default, only when explicitly requested
+
+volumes:
+  synthea-output:
+    driver: local