defaults: - base checkpoint_path: /weights/RFAA_paper_weights.pt database_params: sequencedb: "/pdb100_2021Mar03/pdb100_2021Mar03" hhdb: "/pdb100_2021Mar03/pdb100_2021Mar03" command: make_msa.sh num_cpus: 4 mem: 64 job_name: "/workdir/3fap" protein_inputs: A: fasta_file: /workdir/3fap_A.fasta B: fasta_file: /workdir/3fap_B.fasta sm_inputs: C: input: /workdir/ARD_ideal.sdf input_type: "sdf"