Update nextflow config for Wes K8s execution with proper profiles

Add standard, k8s, and k8s_gpu profiles matching reference tool patterns. Configure PVC mounting for eureka storage and GPU node selection. Remove Docker-specific containerOptions from process definition.
2026-03-18 11:56:19 +01:00
parent 6eef3bb748
commit b099a5ee38
2 changed files with 39 additions and 26 deletions
--- a/main.nf
+++ b/main.nf
@@ -25,7 +25,6 @@ params.weights = '/mnt/databases/RFAA_paper_weights.pt'

 process RFAA_PREDICT {
    container 'harbor.cluster.omic.ai/omic/rosettafold-all-atom:latest'
-    containerOptions '--rm --gpus all -v /mnt:/mnt'
    publishDir params.outdir, mode: 'copy'
    stageInMode 'copy'