De-lint groups.py
I did my best (via Google) to make sure that renamed public members and methods had minimal impact on others' code.
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@@ -342,7 +342,7 @@ common_charge_centre 0
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remove_penalised_group 1
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# non-covalent coupling
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max_intrinsic_pKa_diff 2.0
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max_intrinsic_pka_diff 2.0
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min_interaction_energy 0.5
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max_free_energy_diff 1.0
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min_swap_pka_shift 1.0
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