Make PROPKA input file generation optional.
Fixes https://github.com/jensengroup/propka-3.1/issues/51.
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@@ -28,6 +28,8 @@ def main():
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my_molecule = read_molecule_file(pdbfile, my_molecule)
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my_molecule.calculate_pka()
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my_molecule.write_pka()
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if options.generate_propka_input:
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my_molecule.write_propka()
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if __name__ == '__main__':
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