Merge branch 'master' into nathan/delint

This commit is contained in:
Nathan Baker
2020-05-23 09:20:01 -07:00
6 changed files with 16 additions and 19 deletions

View File

@@ -215,7 +215,7 @@ def build_parser(parser=None):
group.add_argument("-k", "--keep-protons", dest="keep_protons", action="store_true",
help="Keep protons in input file", default=False)
group.add_argument("-q", "--quiet", action="store_const", const="WARNING",
dest="log_level", help="supress non-warning messages")
dest="log_level", help="suppress non-warning messages")
group.add_argument("--protonate-all", dest="protonate_all", action="store_true",
help="Protonate all atoms (will not influence pKa calculation)",
default=False)
@@ -328,4 +328,3 @@ def debug(*args):
def warning(*args):
"""Log a WARN message"""
logger.warning(_args_to_str(args))