Update executable script name.
Changed script name to propka3 based on https://github.com/jensengroup/propka-3.1/pull/61#discussion_r442326049 Updated additional information in setup.py
This commit is contained in:
10
README.md
10
README.md
@@ -45,7 +45,7 @@ Installation is also possible with
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python setup.py install --user
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will install the `propka32` script in your executable directory,
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will install the `propka3` script in your executable directory,
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as configured for setuptools, for instance `~/.local/bin` while
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python setup.py install --user --install-scripts ~/bin
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@@ -56,7 +56,7 @@ will install the script in the `bin` subdirectory of your home directory.
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PROPKA can be used either as a module or via the installed script; i.e., either
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propka32
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propka3
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or
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@@ -66,15 +66,15 @@ works for invoking PROPKA.
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A brief list of available options can be obtained by running PROPKA with no options:
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propka32
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propka3
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A longer list of options and descriptions is available using the `--help` option:
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propka32 --help
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propka3 --help
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Most users run PROPKA by invoking the program with a PDB file as its argument; e.g.,
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propka32 1hpx.pdb
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propka3 1hpx.pdb
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## Testing (for developers)
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@@ -3,12 +3,12 @@
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This is the original propka script. However, this distribute-based
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installation moved the main() function into propka.run.main and just
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generates a script called `propka32` from the setup.py installation
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generates a script called `propka3` from the setup.py installation
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script. You should not need to use this script.
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(Also note that there can be import problems because the script name
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is the same as the module name; that's why the new script is called
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`propka32`.)
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`propka3`.)
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"""
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from propka.lib import loadOptions
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from propka.input import read_parameter_file, read_molecule_file
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8
setup.py
8
setup.py
@@ -6,7 +6,7 @@ from setuptools import setup, find_packages
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VERSION = "3.2.0"
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setup(
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name="PROPKA",
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name="propka",
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version=VERSION,
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description="Heuristic pKa calculations with ligands", long_description="""
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PROPKA predicts the pKa values of ionizable groups in proteins (version 3.0) and
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@@ -31,6 +31,8 @@ See http://propka.org/ for the PROPKA web server.
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""",
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author="Jan H. Jensen",
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author_email="jhjensen@chem.ku.dk",
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maintainer="Nathan Baker",
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maintainer_email="nathanandrewbaker@gmail.com",
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license="LGPL v2.1",
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url="http://propka.org",
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keywords="science",
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@@ -45,9 +47,9 @@ See http://propka.org/ for the PROPKA web server.
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],
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packages=find_packages(exclude=['scripts']),
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package_data={'propka': ['*.dat', '*.cfg', '*.json']},
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entry_points={'console_scripts': ['propka32 = propka.run:main', ]},
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entry_points={'console_scripts': ['propka3 = propka.run:main', ]},
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zip_safe=True,
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python_requires='>=3.5',
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tests_require=["pandas", "numpy"],
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tests_require=["pandas", "numpy", "pytest"],
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test_suite="tests",
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)
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