Merge pull request #76 from Becksteinlab/coverage-updates

coverage updates

.github/workflows/python-package.yml

@@ -37,7 +37,7 @@ jobs:
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest and coverage
       run: |
-        coverage run -m pytest
+        coverage run --source=propka -m pytest
         coverage report -m | tee coverage.txt
         coverage html
     - name: Upload coverage to https://codecov.io/gh/jensengroup/propka

README.md

@@ -1,6 +1,8 @@
 # PROPKA 3
 
 ![Tests](https://github.com/jensengroup/propka/workflows/Tests/badge.svg)
+![codecov](https://codecov.io/gh/jensengroup/propka/branch/master/graph/badge.svg)](https://codecov.io/gh/jensengroup/propka)
+[![PyPI version](https://badge.fury.io/py/propka.svg)](https://badge.fury.io/py/propka)
 
 PROPKA predicts the pKa values of ionizable groups in proteins
 (version 3.0) and protein-ligand complexes (version 3.1 and later)