Standardize version references to "PROPKA 3".
Partially addresses https://github.com/jensengroup/propka-3.1/pull/61#pullrequestreview-433445231
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# PROPKA 3.2
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# PROPKA 3
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PROPKA predicts the pKa values of ionizable groups in proteins
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(version 3.0) and protein-ligand complexes (version 3.2 and later)
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(version 3.0) and protein-ligand complexes (version 3.1 and later)
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based on the 3D structure.
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For proteins without ligands, both version should produce the same result.
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"""PROPKA 3.2
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"""PROPKA 3
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See https://github.com/jensengroup/propka-3.1 for more information.
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